PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G192000.1
Common NameB456_008G192000, LOC105762505
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 88aa    MW: 9678.9 Da    PI: 5.6649
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G192000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-0611541455
                        HHHHHHHHHHHCTSCCC...TTS-..STCHHHHHHHHHHHHHHH CS
                 HLH 14 driNsafeeLrellPkaskapskK..lsKaeiLekAveYIksLq 55
                        d++N  + +L +llP++ ++++++   s   iL++++ Y++ Lq
  Gorai.008G192000.1 11 DELNALILRLGTLLPQLNHGRHGRasSSTTKILKETCSYVRRLQ 54
                        679*************7777777745677889***********9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.28E-71173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-71167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSGASNKITD DELNALILRL GTLLPQLNHG RHGRASSSTT KILKETCSYV RRLQKEVDDL  60
SERLSQCLDS MDISSSDAEF LTNLLQQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435732.13e-57PREDICTED: transcription factor ILI3-like
SwissprotF4JCN96e-21PRE4_ARATH; Transcription factor PRE4
TrEMBLA0A0D2T8R13e-57A0A0D2T8R1_G
STRINGGLYMA06G20520.19e-26(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1835148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47710.14e-22BANQUO 3
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]